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README.last
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To run the experiments (from $HOME/cgenie.muffin/genie-main):

*** MODERN CONFIG ***

* standard (no temeprature-dependent remin) modern (preindustrial) carbon cycle starting from 'cold' *

./runmuffin.sh cgenie.eb_go_gs_ac_bg.worjh2.ANTH TALK/Stanford.2014 worjh2.Caoetal2009.SPIN 10000

* historical (no temeprature-dependent remin) modern (preindustrial) carbon cycle starting from the pre-industrial spin-up *

./runmuffin.sh cgenie.eb_go_gs_ac_bg.worjh2.ANTH TALK/Stanford.2014 worjh2.Caoetal2009.historical 310 worjh2.Caoetal2009.SPIN

* temeprature-dependent remin modern (preindustrial) carbon cycle starting from 'cold' *

./runmuffin.sh cgenie.eb_go_gs_ac_bg.worjh2.ANTH TALK/Stanford.2014 worjh2.PO4.TreminALT2.SPIN 10000

* historical (temeprature-dependent remin) modern (preindustrial) carbon cycle starting from the pre-industrial spin-up *

./runmuffin.sh cgenie.eb_go_gs_ac_bg.worjh2.ANTH TALK/Stanford.2014 worjh2.PO4.TreminALT2.HIST 310 worjh2.PO4.TreminALT2.SPIN

*** WEATHERING AND CACO3 BURIAL VS. SATURATION ENSEMBLE ***

* ensemble of experiments, differing only in the appplied (fixed) weathering flux (varying from 5.0 Tmol CaCO3 yr-1 to 40.0 Tmol CaCO3 yr-1 *

./runmuffin.sh cgenie.eb_go_gs_ac_bg_sg_rg_gl.p0650f.BASE TALK/Stanford.2014 140216.p0650fR.x0p5weather.SPINgl 200000
./runmuffin.sh cgenie.eb_go_gs_ac_bg_sg_rg_gl.p0650f.BASE TALK/Stanford.2014 140216.p0650fR.x1p0weather.SPINgl 
./runmuffin.sh cgenie.eb_go_gs_ac_bg_sg_rg_gl.p0650f.BASE TALK/Stanford.2014 140216.p0650fR.x1p5weather.SPINgl 200000
./runmuffin.sh cgenie.eb_go_gs_ac_bg_sg_rg_gl.p0650f.BASE TALK/Stanford.2014 140216.p0650fR.x2p0weather.SPINgl 200000
./runmuffin.sh cgenie.eb_go_gs_ac_bg_sg_rg_gl.p0650f.BASE TALK/Stanford.2014 140216.p0650fR.x3p0weather.SPINgl 200000
./runmuffin.sh cgenie.eb_go_gs_ac_bg_sg_rg_gl.p0650f.BASE TALK/Stanford.2014 140216.p0650fR.x4p0weather.SPINgl 200000

*** EOCENE CONFIG ***

* temeprature-dependent remin spin-up *

./runmuffin.sh cgenie.eb_go_gs_ac_bg.p0055c.BASES TALK/Stanford.2014 p0055c.PO4.TreminALT2.SPIN 10000

*** MAASTRICHTIAN CONFIG ***

* latest Maastrichtian starting from 'cold' *

./runmuffin.sh cgenie.eb_go_gs_ac_bg.p0067f.BASESFe TALK/Stanford.2014 p0067f.x04pCO2 10000

* latest Maastrichtian starting from x4 CO2 (requires p0067f.x04pCO2 to have been run first, as per above) *

./runmuffin.sh cgenie.eb_go_gs_ac_bg.p0067f.BASESFe TALK/Stanford.2014 p0067f.x01pCO2 10000 131206.p0067f.x04pCO2 
./runmuffin.sh cgenie.eb_go_gs_ac_bg.p0067f.BASESFe TALK/Stanford.2014 p0067f.x02pCO2 10000 131206.p0067f.x04pCO2 
./runmuffin.sh cgenie.eb_go_gs_ac_bg.p0067f.BASESFe TALK/Stanford.2014 p0067f.x08pCO2 10000 131206.p0067f.x04pCO2 
./runmuffin.sh cgenie.eb_go_gs_ac_bg.p0067f.BASESFe TALK/Stanford.2014 p0067f.x16pCO2 10000 131206.p0067f.x04pCO2